STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU45821.1Baseplate J-like protein. (345 aa)    
Predicted Functional Partners:
KPU45820.1
Hypothetical protein.
 
 
 0.998
KPU45817.1
LysM domain protein.
 
 
 0.997
KPU45813.1
Phage tail sheath protein.
 
 
 0.993
KPU45818.1
Hypothetical protein.
 
    0.970
KPU45819.1
Hypothetical protein.
 
    0.966
KPU45825.1
Hypothetical protein.
 
    0.959
KPU42160.1
Hypothetical protein.
 
 
 0.953
KPU42152.1
Lysozyme.
  
 
 0.951
KPU45816.1
Hypothetical protein.
 
     0.943
KPU44813.1
LysM domain/BON superfamily protein.
 
 
 0.936
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.