Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPU45462.1 | ydhD | OXPF_06950 | OXPF_06960 | Hypothetical protein. | Putative sporulation-specific glycosylase YdhD. | 0.510 |
icaA | pdaA_1 | OXPF_11480 | OXPF_10480 | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor. | 0.901 |
icaA | pgdA_2 | OXPF_11480 | OXPF_08840 | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | peptidoglycan-N-acetylglucosamine deacetylase. | 0.962 |
icaA | pgdA_3 | OXPF_11480 | OXPF_39960 | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | peptidoglycan-N-acetylglucosamine deacetylase. | 0.962 |
icaA | ydhD | OXPF_11480 | OXPF_06960 | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | Putative sporulation-specific glycosylase YdhD. | 0.901 |
pdaA_1 | icaA | OXPF_10480 | OXPF_11480 | peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor. | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | 0.901 |
pdaA_1 | ydhD | OXPF_10480 | OXPF_06960 | peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor. | Putative sporulation-specific glycosylase YdhD. | 0.660 |
pgdA_2 | icaA | OXPF_08840 | OXPF_11480 | peptidoglycan-N-acetylglucosamine deacetylase. | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | 0.962 |
pgdA_2 | ydhD | OXPF_08840 | OXPF_06960 | peptidoglycan-N-acetylglucosamine deacetylase. | Putative sporulation-specific glycosylase YdhD. | 0.900 |
pgdA_3 | icaA | OXPF_39960 | OXPF_11480 | peptidoglycan-N-acetylglucosamine deacetylase. | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | 0.962 |
pgdA_3 | ydhD | OXPF_39960 | OXPF_06960 | peptidoglycan-N-acetylglucosamine deacetylase. | Putative sporulation-specific glycosylase YdhD. | 0.904 |
plsY_2 | ydhD | OXPF_06970 | OXPF_06960 | Glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | Putative sporulation-specific glycosylase YdhD. | 0.426 |
plsY_2 | yndE_1 | OXPF_06970 | OXPF_06980 | Glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | Spore germination protein YndE. | 0.526 |
ydhD | KPU45462.1 | OXPF_06960 | OXPF_06950 | Putative sporulation-specific glycosylase YdhD. | Hypothetical protein. | 0.510 |
ydhD | icaA | OXPF_06960 | OXPF_11480 | Putative sporulation-specific glycosylase YdhD. | poly-beta-1,6-N-acetyl-D-glucosamine synthase. | 0.901 |
ydhD | pdaA_1 | OXPF_06960 | OXPF_10480 | Putative sporulation-specific glycosylase YdhD. | peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor. | 0.660 |
ydhD | pgdA_2 | OXPF_06960 | OXPF_08840 | Putative sporulation-specific glycosylase YdhD. | peptidoglycan-N-acetylglucosamine deacetylase. | 0.900 |
ydhD | pgdA_3 | OXPF_06960 | OXPF_39960 | Putative sporulation-specific glycosylase YdhD. | peptidoglycan-N-acetylglucosamine deacetylase. | 0.904 |
ydhD | plsY_2 | OXPF_06960 | OXPF_06970 | Putative sporulation-specific glycosylase YdhD. | Glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.426 |
ydhD | yndE_1 | OXPF_06960 | OXPF_06980 | Putative sporulation-specific glycosylase YdhD. | Spore germination protein YndE. | 0.456 |
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