Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ald2Alanine dehydrogenase 2; Belongs to the AlaDH/PNT family. (372 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.972
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.866
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.866
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.858
nadE_2
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.854
KPU43395.1
NAD-dependent malic enzyme.
    
 0.765
lrp_1
Leucine-responsive regulatory protein.
     
 0.757
yrpC
Glutamate racemase 2; Provides the (R)-glutamate required for cell wall biosynthesis.
    
  0.751
KPU45877.1
Serine-pyruvate aminotransferase.
     
 0.743
korB
2-oxoglutarate oxidoreductase subunit KorB.
     
 0.742
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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