STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacAD-alanyl-D-alanine carboxypeptidase DacA precursor; Belongs to the peptidase S11 family. (441 aa)    
Predicted Functional Partners:
spoVD_1
Stage V sporulation protein D.
 
 
 0.753
spoVD_2
Stage V sporulation protein D.
 
 
 0.753
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.714
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
 
0.690
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
 
0.688
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
 
0.687
dacF_1
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
  
 
0.681
pbpF_1
Penicillin-binding protein 1F.
   
 
 0.677
pbpF_2
Penicillin-binding protein 1F.
   
 
 0.677
ykfC
gamma-D-glutamyl-L-lysine endopeptidase.
    
 0.629
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.