STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_3Sensor histidine kinase YycG. (587 aa)    
Predicted Functional Partners:
pknB
Serine/threonine-protein kinase PknB.
 
 0.987
zraS
Sensor protein ZraS.
 
 
0.925
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
  0.909
KPU44557.1
Blue-light-activated protein.
 
0.887
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
  0.878
phoP_4
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
  0.872
yycF_1
Transcriptional regulatory protein YycF.
 
  0.869
mprA_1
Response regulator MprA.
 
  0.865
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
  0.857
walR_1
Transcriptional regulatory protein WalR.
  
  0.856
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.