STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU45172.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
cinA
Putative competence-damage inducible protein; Belongs to the CinA family.
    
 0.722
nadE_2
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.671
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.535
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.520
pknB
Serine/threonine-protein kinase PknB.
  
 
 
 0.494
KPU45173.1
Adenosine monophosphate-protein transferase SoFic.
       0.481
kdpE_1
KDP operon transcriptional regulatory protein KdpE.
    
  0.456
cheY
Chemotaxis protein CheY.
    
  0.456
KPU45171.1
Hypothetical protein.
       0.432
KPU44179.1
Lipopolysaccharide regulatory protein.
     
 0.401
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.