STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluB_1Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (258 aa)    
Predicted Functional Partners:
cmk_1
Cytidylate kinase.
  
 0.950
rsmH_1
Ribosomal RNA small subunit methyltransferase H.
     
 0.844
der_2
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.796
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.760
exoA
Exodeoxyribonuclease.
  
    0.758
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 0.746
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.
  
    0.536
KPU43642.1
Putative ABC transporter ATP-binding protein.
 
     0.517
pyrK_1
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit.
       0.516
mnmE_1
tRNA modification GTPase MnmE.
  
  
 0.514
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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