STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU44953.1Hypothetical protein. (699 aa)    
Predicted Functional Partners:
chuR
Anaerobic sulfatase-maturating enzyme.
  
 
 0.903
KPU44990.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
  
 
 0.870
KPU44954.1
Hypothetical protein; Belongs to the UPF0297 family.
       0.813
dkgA
2,5-diketo-D-gluconic acid reductase A.
  
  
 0.806
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.800
KPU44883.1
Thiamin pyrophosphokinase, catalytic domain.
 
     0.793
KPU44469.1
Type III restriction enzyme, res subunit.
    
   0.785
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.785
gdhIV
Glucose 1-dehydrogenase 4.
   
 
 0.784
ydaD
General stress protein 39.
   
 
 0.784
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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