Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPU44983.1 | csoR_1 | OXPF_14610 | OXPF_14550 | Putative metallo-hydrolase. | Copper-sensing transcriptional repressor CsoR. | 0.467 |
KPU44983.1 | hemZ_1 | OXPF_14610 | OXPF_14590 | Putative metallo-hydrolase. | Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ. | 0.693 |
KPU44983.1 | hisS | OXPF_14610 | OXPF_14580 | Putative metallo-hydrolase. | histidine--tRNA ligase. | 0.537 |
copA_2 | copA_3 | OXPF_07250 | OXPF_23890 | Copper-exporting P-type ATPase A. | Copper-exporting P-type ATPase A. | 0.884 |
copA_2 | csoR_1 | OXPF_07250 | OXPF_14550 | Copper-exporting P-type ATPase A. | Copper-sensing transcriptional repressor CsoR. | 0.511 |
copA_3 | copA_2 | OXPF_23890 | OXPF_07250 | Copper-exporting P-type ATPase A. | Copper-exporting P-type ATPase A. | 0.884 |
copA_3 | csoR_1 | OXPF_23890 | OXPF_14550 | Copper-exporting P-type ATPase A. | Copper-sensing transcriptional repressor CsoR. | 0.603 |
copA_3 | merP | OXPF_23890 | OXPF_23880 | Copper-exporting P-type ATPase A. | Mercuric transport protein periplasmic component precursor. | 0.977 |
csoR_1 | KPU44983.1 | OXPF_14550 | OXPF_14610 | Copper-sensing transcriptional repressor CsoR. | Putative metallo-hydrolase. | 0.467 |
csoR_1 | copA_2 | OXPF_14550 | OXPF_07250 | Copper-sensing transcriptional repressor CsoR. | Copper-exporting P-type ATPase A. | 0.511 |
csoR_1 | copA_3 | OXPF_14550 | OXPF_23890 | Copper-sensing transcriptional repressor CsoR. | Copper-exporting P-type ATPase A. | 0.603 |
csoR_1 | fliN | OXPF_14550 | OXPF_17440 | Copper-sensing transcriptional repressor CsoR. | Flagellar motor switch protein FliN. | 0.451 |
csoR_1 | glyA | OXPF_14550 | OXPF_14540 | Copper-sensing transcriptional repressor CsoR. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.539 |
csoR_1 | hemZ_1 | OXPF_14550 | OXPF_14590 | Copper-sensing transcriptional repressor CsoR. | Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ. | 0.464 |
csoR_1 | hisS | OXPF_14550 | OXPF_14580 | Copper-sensing transcriptional repressor CsoR. | histidine--tRNA ligase. | 0.528 |
csoR_1 | merP | OXPF_14550 | OXPF_23880 | Copper-sensing transcriptional repressor CsoR. | Mercuric transport protein periplasmic component precursor. | 0.608 |
csoR_1 | tcdA | OXPF_14550 | OXPF_14560 | Copper-sensing transcriptional repressor CsoR. | tRNA threonylcarbamoyladenosine dehydratase. | 0.589 |
csoR_1 | xylB_2 | OXPF_14550 | OXPF_31780 | Copper-sensing transcriptional repressor CsoR. | Aryl-alcohol dehydrogenase. | 0.744 |
fliN | csoR_1 | OXPF_17440 | OXPF_14550 | Flagellar motor switch protein FliN. | Copper-sensing transcriptional repressor CsoR. | 0.451 |
glyA | csoR_1 | OXPF_14540 | OXPF_14550 | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Copper-sensing transcriptional repressor CsoR. | 0.539 |
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