STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerBC_3Spore germination protein B3 precursor. (395 aa)    
Predicted Functional Partners:
yndE_4
Spore germination protein YndE.
  
 0.991
gerBA_2
Spore germination protein B1.
  
 0.950
KPU44581.1
Stage II sporulation protein R (spore_II_R).
 
     0.818
gerAA_1
Spore germination protein A1.
  
 0.808
gerBA_1
Spore germination protein B1.
  
 0.806
gerAA_2
Spore germination protein A1.
  
 0.785
ypeB
Sporulation protein YpeB.
 
   
 0.746
yndE_2
Spore germination protein YndE.
 
  
 0.735
yndE_3
Spore germination protein YndE.
 
  
 0.732
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.725
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.