STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malT_1HTH-type transcriptional regulator MalT. (1109 aa)    
Predicted Functional Partners:
pknB
Serine/threonine-protein kinase PknB.
  
 
 0.760
degU_1
Transcriptional regulatory protein DegU.
   
 
 0.555
KPU44467.1
Hypothetical protein.
   
 
 0.555
degU_2
Transcriptional regulatory protein DegU.
   
 
 0.555
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
    
  0.540
KPU46342.1
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.474
KPU43388.1
18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.474
KPU43592.1
18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.474
KPU43110.1
Putative peptidase.
  
   
 0.430
prkC
Serine/threonine-protein kinase PrkC.
   
 
 0.425
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.