STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaA_1Bifunctional transcriptional activator/DNA repair enzyme AdaA. (322 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.749
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.749
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.747
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.714
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.709
KPU43873.1
Hypothetical protein.
 
    0.707
torS
Sensor protein TorS.
  
  
 0.681
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.681
irtA_1
Iron import ATP-binding/permease protein IrtA.
 
    0.681
KPU42996.1
Hypothetical protein.
 
    0.680
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.