Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuCACarnitine transport ATP-binding protein OpuCA. (375 aa)    
Predicted Functional Partners:
opuCC
Carnitine transport binding protein OpuCC precursor.
 0.999
modB
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.702
KPU44486.1
Hypothetical protein.
       0.588
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
     
  0.581
opuAB
Glycine betaine transport system permease protein OpuAB.
 
  
 0.573
KPU44390.1
Putative ABC transporter ATP-binding protein.
 
     
0.567
macB_7
Macrolide export ATP-binding/permease protein MacB.
 
      0.560
macB_6
Macrolide export ATP-binding/permease protein MacB.
 
      0.542
KPU46081.1
DNA-binding transcriptional repressor ExuR.
 
  
 0.518
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
 
    
 0.506
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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