STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU44408.1Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family. (371 aa)    
Predicted Functional Partners:
KPU46206.1
Hypothetical protein.
  
     0.750
KPU45196.1
Hypothetical protein.
  
     0.743
KPU46125.1
Hypothetical protein.
  
     0.722
KPU42499.1
Hypothetical protein.
  
     0.664
KPU44333.1
Hypothetical protein; Methylene-tetrahydrofolate reductase C terminal.
  
     0.655
KPU43346.1
Bacterial Ig-like domain (group 2).
  
     0.652
nasF
uroporphyrinogen-III C-methyltransferase.
  
 
 0.642
KPU44409.1
Methylcobalamin:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
 
    
0.615
KPU45213.1
Carbohydrate diacid transcriptional activator CdaR.
  
     0.608
yesS_1
HTH-type transcriptional regulator YesS.
  
     0.575
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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