STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppD_4Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (305 aa)    
Predicted Functional Partners:
ddpC_1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.995
gsiD_3
Glutathione transport system permease protein GsiD.
 
 0.987
dppC_2
Dipeptide transport system permease protein DppC.
 
 0.986
ddpC_2
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.986
gsiD_2
Glutathione transport system permease protein GsiD.
 
 0.986
ddpC_4
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.984
dppC_1
Dipeptide transport system permease protein DppC.
 
 0.977
ddpC_3
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.969
gsiD_4
Glutathione transport system permease protein GsiD.
 
 0.965
gsiC_2
Glutathione transport system permease protein GsiC.
 
 0.964
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.