STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU44219.1gamma-D-glutamyl-L-diamino acid endopeptidase 1. (423 aa)    
Predicted Functional Partners:
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
    
 0.911
KPU43700.1
Hypothetical protein.
 
  
 0.835
lytC_6
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 0.832
guaA_1
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.831
KPU44565.1
Glycosyl hydrolases family 18.
 
 
 0.779
thrS
threonine--tRNA ligase 1.
  
 
 0.776
cwlJ
Cell wall hydrolase CwlJ.
 
  
 0.766
cinA
Putative competence-damage inducible protein; Belongs to the CinA family.
  
 
 0.761
KPU46228.1
Hypothetical protein.
  
     0.731
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.725
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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