STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjmB_8Putative symporter YjmB. (493 aa)    
Predicted Functional Partners:
yjmB_1
Putative symporter YjmB.
  
     0.775
yjmB_4
Putative symporter YjmB.
  
     0.775
yicJ_1
Inner membrane symporter YicJ.
  
     0.775
yihP_2
Putative 2,3-dihydroxypropane-1-sulfonate exporter.
  
     0.775
melB_1
Melibiose carrier protein.
  
     0.775
uidB
Glucuronide carrier protein.
  
     0.775
yjmB_11
Putative symporter YjmB.
  
     0.775
yjmB_5
Putative symporter YjmB.
  
     0.774
melB_2
Melibiose carrier protein.
  
     0.774
KPU44278.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
       0.678
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.