STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_6Alkaline phosphatase synthesis sensor protein PhoR. (486 aa)    
Predicted Functional Partners:
srrA_2
Transcriptional regulatory protein SrrA.
 0.988
pknB
Serine/threonine-protein kinase PknB.
  
 0.979
zraS
Sensor protein ZraS.
 
 0.927
yycF_4
Transcriptional regulatory protein YycF.
 0.916
regX3_1
Sensory transduction protein regX3.
 0.913
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.888
walR_2
Transcriptional regulatory protein WalR.
 0.844
rpfC_2
Sensory/regulatory protein RpfC.
 
 
0.842
rpfC_1
Sensory/regulatory protein RpfC.
 
 
0.841
phoP_4
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.840
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.