STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdpE_2KDP operon transcriptional regulatory protein KdpE. (233 aa)    
Predicted Functional Partners:
kdpD_1
Sensor protein KdpD.
 0.996
pknB
Serine/threonine-protein kinase PknB.
  
 0.992
zraS
Sensor protein ZraS.
 0.990
rpfC_1
Sensory/regulatory protein RpfC.
0.971
rpfC_2
Sensory/regulatory protein RpfC.
0.970
rsbP
Phosphoserine phosphatase RsbP.
  
 0.969
kdpD_2
Sensor protein KdpD.
 0.949
yycG_7
Sensor histidine kinase YycG.
 0.906
kinE_1
Sporulation kinase E.
 
 
 0.853
todS_1
Sensor histidine kinase TodS.
 0.831
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.