metH_18 protein (Oxobacter pfennigii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

metH_18

Methionine synthase. (212 aa)

Predicted Functional Partners:

yitJ_4

0.949

acsE_4

0.918

acsE_1

0.909

acsE_2

0.880

acsE_3

0.861

acsE_5

0.840

KPU44340.1

0.580

deoC

0.541

oraS

0.489

KPU43732.1

0.467

Your Current Organism:

Oxobacter pfennigii

NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPU43732.1	acsE_1	OXPF_25920	OXPF_08490	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	0.556
KPU43732.1	acsE_2	OXPF_25920	OXPF_09120	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	0.552
KPU43732.1	acsE_5	OXPF_25920	OXPF_42560	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	0.580
KPU43732.1	metH_18	OXPF_25920	OXPF_25090	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	Methionine synthase.	0.467
KPU44340.1	metH_18	OXPF_25100	OXPF_25090	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	Methionine synthase.	0.580
acsE_1	KPU43732.1	OXPF_08490	OXPF_25920	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.556
acsE_1	metH_18	OXPF_08490	OXPF_25090	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Methionine synthase.	0.909
acsE_1	yitJ_4	OXPF_08490	OXPF_34900	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.	0.989
acsE_2	KPU43732.1	OXPF_09120	OXPF_25920	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.552
acsE_2	metH_18	OXPF_09120	OXPF_25090	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Methionine synthase.	0.880
acsE_2	yitJ_4	OXPF_09120	OXPF_34900	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.	0.988
acsE_3	metH_18	OXPF_11640	OXPF_25090	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Methionine synthase.	0.861
acsE_3	yitJ_4	OXPF_11640	OXPF_34900	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.	0.987
acsE_4	metH_18	OXPF_26760	OXPF_25090	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Methionine synthase.	0.918
acsE_4	yitJ_4	OXPF_26760	OXPF_34900	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.	0.988
acsE_5	KPU43732.1	OXPF_42560	OXPF_25920	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.580
acsE_5	metH_18	OXPF_42560	OXPF_25090	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Methionine synthase.	0.840
acsE_5	yitJ_4	OXPF_42560	OXPF_34900	5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.	0.988
deoC	metH_18	OXPF_22170	OXPF_25090	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	Methionine synthase.	0.541
metH_18	KPU43732.1	OXPF_25090	OXPF_25920	Methionine synthase.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.467