STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdpD_2Sensor protein KdpD. (229 aa)    
Predicted Functional Partners:
kdpE_2
KDP operon transcriptional regulatory protein KdpE.
 0.949
pknB
Serine/threonine-protein kinase PknB.
  
 0.949
zraS
Sensor protein ZraS.
 
0.933
cheR2
Chemotaxis protein methyltransferase cher2.
   
  0.910
KPU44557.1
Blue-light-activated protein.
 
0.904
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 0.868
rpfC_2
Sensory/regulatory protein RpfC.
0.862
rpfC_1
Sensory/regulatory protein RpfC.
 
0.860
hssR_1
Heme response regulator HssR.
 0.849
hssR_2
Heme response regulator HssR.
 0.844
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.