STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU43511.1Peptidase family S41. (426 aa)    
Predicted Functional Partners:
yxdM
ABC transporter permease protein YxdM.
   
   0.793
yxdL
ABC transporter ATP-binding protein YxdL.
       0.773
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
   0.703
KPU43547.1
DNA-binding transcriptional regulator EnvR.
  
     0.565
graR
Response regulator protein GraR.
  
    0.495
graS
Sensor histidine kinase GraS.
       0.495
pknB
Serine/threonine-protein kinase PknB.
     
 0.462
patB
Cystathionine beta-lyase PatB.
   
 
  0.434
pepN
Aminopeptidase N.
    
 0.432
secD
Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
   
  0.429
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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