STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioCMalonyl-[acyl-carrier protein] O-methyltransferase. (243 aa)    
Predicted Functional Partners:
gcvT
Aminomethyltransferase.
    
 0.697
hndC_3
NADP-reducing hydrogenase subunit HndC.
    
 0.584
ubiE_4
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
     0.551
KPU45420.1
Nucleotidyltransferase domain protein.
 
     0.515
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.490
dpaL
Diaminopropionate ammonia-lyase.
 
  
 0.475
puuB
Gamma-glutamylputrescine oxidoreductase.
   
 0.470
bioB_1
Biotin synthase.
  
 
 0.449
tam
Trans-aconitate 2-methyltransferase.
 
  
0.424
graS
Sensor histidine kinase GraS.
  
     0.414
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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