STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patBCystathionine beta-lyase PatB. (392 aa)    
Predicted Functional Partners:
mccB
Cystathionine gamma-lyase.
 
 
 0.876
mdeA_2
Methionine gamma-lyase.
 
 
 0.848
mdeA_1
Methionine gamma-lyase.
   
 0.845
KPU44851.1
Aspartate aminotransferase.
 
  
0.812
aspC
Aspartate aminotransferase.
    
0.800
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
    
  0.800
pepD
Cytosol non-specific dipeptidase.
    
 0.798
tdcB
L-threonine dehydratase catabolic TdcB.
    
  0.795
cysK1
O-acetylserine sulfhydrylase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.788
cysK_1
Cysteine synthase.
    
 0.788
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.