STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaA_2Bifunctional transcriptional activator/DNA repair enzyme AdaA. (305 aa)    
Predicted Functional Partners:
btr_2
HTH-type transcriptional activator Btr.
 
  
  0.869
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.749
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.749
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.747
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.681
torS
Sensor protein TorS.
     
 0.635
arcB_2
Aerobic respiration control sensor protein ArcB.
     
 0.635
pchR
Regulatory protein PchR.
  
     0.567
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.476
btr_1
HTH-type transcriptional activator Btr.
  
  
 
0.475
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.