STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU43190.1Recombinase. (565 aa)    
Predicted Functional Partners:
KPU45090.1
Type IV secretory system conjugative DNA transfer.
    0.707
KPU45081.1
Hypothetical protein.
  
     0.700
KPU43231.1
Type IV secretory system conjugative DNA transfer.
    0.681
rapA_2
RNA polymerase-associated protein RapA.
 
   
 0.675
KPU45093.1
Hypothetical protein.
 
   
 0.608
KPU45056.1
Relaxase/mobilization nuclease domain protein.
 
   
 0.592
KPU43206.1
Hypothetical protein.
  
     0.567
KPU45024.1
Hypothetical protein; Resolvase, N terminal domain.
  
     0.555
KPU43200.1
Relaxase/mobilization nuclease domain protein.
 
   
 0.555
KPU43209.1
AAA-like domain protein.
 
    0.513
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.