STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arlS_2Signal transduction histidine-protein kinase ArlS. (429 aa)    
Predicted Functional Partners:
arlR_2
Response regulator ArlR.
 0.987
arlR_1
Response regulator ArlR.
 0.947
pknB
Serine/threonine-protein kinase PknB.
   
 0.916
zraS
Sensor protein ZraS.
 
 
0.905
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
 0.884
walR_1
Transcriptional regulatory protein WalR.
 
 0.882
mprA_1
Response regulator MprA.
 0.876
hssR_1
Heme response regulator HssR.
 
 0.874
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.872
srrA_4
Transcriptional regulatory protein SrrA.
 
 0.866
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.