STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU43220.1Hypothetical protein. (301 aa)    
Predicted Functional Partners:
KPU43221.1
Hypothetical protein.
 
  
 0.988
KPU43224.1
Flagellar basal body P-ring biosynthesis protein FlgA.
 
  
 0.985
ptlH_2
Type IV secretion system protein PtlH.
 
  
 0.977
KPU45074.1
Hypothetical protein.
 
  
 0.951
KPU45077.1
SAF domain protein.
 
  
 0.942
ptlH_1
Type IV secretion system protein PtlH.
 
  
 0.910
comC_3
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.843
KPU43213.1
Hypothetical protein; CARDB.
 
     0.834
KPU43215.1
Hypothetical protein.
 
     0.834
comC_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.806
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.