STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgBP-aminobenzoyl-glutamate hydrolase subunit B; Belongs to the peptidase M20A family. (389 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.818
yxeP_1
Putative hydrolase YxeP.
 
     0.677
ykfA
Putative murein peptide carboxypeptidase.
     0.599
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
  
 0.538
comM
Competence protein ComM.
  
   0.535
tmk
Thymidylate kinase.
       0.526
KPU43058.1
Inhibitor of sigma-G Gin.
       0.521
nfdA
N-substituted formamide deformylase precursor.
 
     0.512
dnaX_2
DNA polymerase III subunit tau.
       0.512
KPU43062.1
Hypothetical protein; PSP1 C-terminal conserved region.
       0.511
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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