Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPU43091.1 | KPU43092.1 | OXPF_33410 | OXPF_33420 | Hypothetical protein. | Hypothetical protein. | 0.768 |
KPU43091.1 | licC | OXPF_33410 | OXPF_33400 | Hypothetical protein. | Lichenan permease IIC component. | 0.511 |
KPU43092.1 | KPU43091.1 | OXPF_33420 | OXPF_33410 | Hypothetical protein. | Hypothetical protein. | 0.768 |
KPU43092.1 | licC | OXPF_33420 | OXPF_33400 | Hypothetical protein. | Lichenan permease IIC component. | 0.507 |
bglA | gmuF | OXPF_23490 | OXPF_40220 | Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family. | Putative mannose-6-phosphate isomerase GmuF. | 0.925 |
bglA | licC | OXPF_23490 | OXPF_33400 | Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family. | Lichenan permease IIC component. | 0.983 |
bglA | nagA | OXPF_23490 | OXPF_18040 | Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family. | N-acetylglucosamine-6-phosphate deacetylase. | 0.427 |
cggR | licC | OXPF_11420 | OXPF_33400 | Central glycolytic regulator protein. | Lichenan permease IIC component. | 0.490 |
cggR | ptsI | OXPF_11420 | OXPF_05390 | Central glycolytic regulator protein. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.410 |
cggR | rpoN | OXPF_11420 | OXPF_11430 | Central glycolytic regulator protein. | RNA polymerase sigma-54 factor. | 0.725 |
glcR | licC | OXPF_39870 | OXPF_33400 | HTH-type transcriptional repressor GlcR. | Lichenan permease IIC component. | 0.458 |
glcR | nagA | OXPF_39870 | OXPF_18040 | HTH-type transcriptional repressor GlcR. | N-acetylglucosamine-6-phosphate deacetylase. | 0.475 |
glcR | ptsI | OXPF_39870 | OXPF_05390 | HTH-type transcriptional repressor GlcR. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.563 |
gmuF | bglA | OXPF_40220 | OXPF_23490 | Putative mannose-6-phosphate isomerase GmuF. | Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family. | 0.925 |
gmuF | licC | OXPF_40220 | OXPF_33400 | Putative mannose-6-phosphate isomerase GmuF. | Lichenan permease IIC component. | 0.482 |
gmuF | nagA | OXPF_40220 | OXPF_18040 | Putative mannose-6-phosphate isomerase GmuF. | N-acetylglucosamine-6-phosphate deacetylase. | 0.547 |
licC | KPU43091.1 | OXPF_33400 | OXPF_33410 | Lichenan permease IIC component. | Hypothetical protein. | 0.511 |
licC | KPU43092.1 | OXPF_33400 | OXPF_33420 | Lichenan permease IIC component. | Hypothetical protein. | 0.507 |
licC | bglA | OXPF_33400 | OXPF_23490 | Lichenan permease IIC component. | Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family. | 0.983 |
licC | cggR | OXPF_33400 | OXPF_11420 | Lichenan permease IIC component. | Central glycolytic regulator protein. | 0.490 |
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