STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU42978.1Hypothetical protein; TfoX C-terminal domain. (84 aa)    
Predicted Functional Partners:
hisE
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
    
  0.710
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
    
  0.602
KPU45262.1
Hypothetical protein.
  
     0.589
bmrR_2
Multidrug-efflux transporter 1 regulator.
 
     0.574
KPU42977.1
Hypothetical protein.
       0.559
KPU42468.1
Glyoxalase-like domain protein.
 
     0.543
KPU45575.1
Hypothetical protein.
  
     0.541
slyA_3
Transcriptional regulator SlyA.
  
     0.527
KPU45633.1
Hypothetical protein.
  
     0.514
KPU44363.1
Hypothetical protein.
 
     0.469
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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