STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tktTransketolase. (312 aa)    
Predicted Functional Partners:
dxs_1
1-deoxy-D-xylulose-5-phosphate synthase.
 0.999
dxs_3
1-deoxy-D-xylulose-5-phosphate synthase.
 0.999
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.953
mtnW
2,3-diketo-5-methylthiopentyl-1-phosphate enolase.
 
     0.887
ywlF
Putative sugar phosphate isomerase YwlF.
    
 0.860
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.819
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.808
glpX_1
Fructose-1,6-bisphosphatase class 2.
     
  0.805
glpX_2
Fructose-1,6-bisphosphatase class 2; Belongs to the FBPase class 2 family.
     
  0.805
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.790
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.