STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVB_2Stage V sporulation protein B. (519 aa)    
Predicted Functional Partners:
mazG
Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.
  
    0.777
KPU44954.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.714
glnA_1
Glutamine synthetase 1.
 
     0.696
spoVT
Stage V sporulation protein T.
 
   
 0.682
sigH
RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.
  
    0.679
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
  
     0.629
hslR
Heat shock protein 15.
  
    0.558
hup_2
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.556
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.506
lon2_2
Lon protease 2.
  
     0.501
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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