STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rebO_9Flavin-dependent L-tryptophan oxidase RebO precursor. (568 aa)    
Predicted Functional Partners:
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.753
KPU42185.1
Putative methyltransferase.
  
 
 0.721
rapA_1
RNA polymerase-associated protein RapA.
    
 0.682
crtI_1
Phytoene desaturase (lycopene-forming).
  
  
 0.595
KPU42445.1
Hypothetical protein.
   
 
 0.589
dhaT_1
1,3-propanediol dehydrogenase.
     
 0.577
KPU43765.1
2-oxoacid dehydrogenases acyltransferase (catalytic domain).
   
 
 0.536
KPU42732.1
PAP2 superfamily protein.
   
 
 0.536
KPU43493.1
Hypothetical protein.
  
     0.527
pheA
P-protein.
     
 0.496
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.