Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rebO_9Flavin-dependent L-tryptophan oxidase RebO precursor. (568 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.787
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.766
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.747
KPU42185.1
Putative methyltransferase.
  
 
 0.709
rapA_1
RNA polymerase-associated protein RapA.
    
 0.670
pheA
P-protein.
     
 0.575
crtI_1
Phytoene desaturase (lycopene-forming).
  
  
 0.551
KPU44887.1
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.532
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.532
KPU43493.1
Hypothetical protein.
  
     0.527
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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