Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPU42944.1 | noc | OXPF_37130 | OXPF_37170 | Hypothetical protein. | Nucleoid occlusion protein; Belongs to the ParB family. | 0.462 |
KPU42944.1 | soj_2 | OXPF_37130 | OXPF_37150 | Hypothetical protein. | Sporulation initiation inhibitor protein Soj. | 0.645 |
KPU42944.1 | spo0C_3 | OXPF_37130 | OXPF_37140 | Hypothetical protein. | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. | 0.667 |
KPU42947.1 | soj_2 | OXPF_37160 | OXPF_37150 | Hypothetical protein. | Sporulation initiation inhibitor protein Soj. | 0.565 |
KPU42947.1 | spo0C_3 | OXPF_37160 | OXPF_37140 | Hypothetical protein. | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. | 0.583 |
dnaA_3 | noc | OXPF_37240 | OXPF_37170 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Nucleoid occlusion protein; Belongs to the ParB family. | 0.505 |
dnaA_3 | soj_2 | OXPF_37240 | OXPF_37150 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Sporulation initiation inhibitor protein Soj. | 0.709 |
dnaA_3 | spo0C_3 | OXPF_37240 | OXPF_37140 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. | 0.691 |
dnaA_3 | spoIIIE | OXPF_37240 | OXPF_20560 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA translocase SpoIIIE. | 0.584 |
ffh | soj_2 | OXPF_21000 | OXPF_37150 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Sporulation initiation inhibitor protein Soj. | 0.597 |
noc | KPU42944.1 | OXPF_37170 | OXPF_37130 | Nucleoid occlusion protein; Belongs to the ParB family. | Hypothetical protein. | 0.462 |
noc | dnaA_3 | OXPF_37170 | OXPF_37240 | Nucleoid occlusion protein; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.505 |
noc | rsmG | OXPF_37170 | OXPF_37180 | Nucleoid occlusion protein; Belongs to the ParB family. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.926 |
noc | soj_2 | OXPF_37170 | OXPF_37150 | Nucleoid occlusion protein; Belongs to the ParB family. | Sporulation initiation inhibitor protein Soj. | 0.979 |
noc | spo0C_3 | OXPF_37170 | OXPF_37140 | Nucleoid occlusion protein; Belongs to the ParB family. | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. | 0.849 |
noc | spoIIIE | OXPF_37170 | OXPF_20560 | Nucleoid occlusion protein; Belongs to the ParB family. | DNA translocase SpoIIIE. | 0.727 |
rsmG | noc | OXPF_37180 | OXPF_37170 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Nucleoid occlusion protein; Belongs to the ParB family. | 0.926 |
rsmG | soj_2 | OXPF_37180 | OXPF_37150 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Sporulation initiation inhibitor protein Soj. | 0.563 |
rsmG | spo0C_1 | OXPF_37180 | OXPF_15720 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Chromosome-partitioning protein Spo0J. | 0.698 |
rsmG | spo0C_2 | OXPF_37180 | OXPF_32500 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. | 0.698 |
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