STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU42170.1Hypothetical protein. (182 aa)    
Predicted Functional Partners:
KPU42169.1
Phage terminase large subunit (GpA).
  
    0.543
KPU42167.1
Phage portal protein, lambda family.
  
    0.539
KPU42168.1
Hypothetical protein.
       0.528
KPU42165.1
Mu-like prophage major head subunit gpT.
  
    0.515
KPU42166.1
Caudovirus prohead protease.
  
    0.488
KPU42171.1
Hypothetical protein.
       0.482
KPU42164.1
Hypothetical protein.
  
    0.473
KPU42159.1
Phage tail tube protein FII.
     
 0.470
KPU42162.1
Prophage minor tail protein Z (GPZ).
  
    0.465
KPU42161.1
Hypothetical protein.
       0.450
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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