STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVD_3Stage V sporulation protein D. (805 aa)    
Predicted Functional Partners:
mreC
Cell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape.
 
 
 0.984
ftsW_4
Lipid II flippase FtsW; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.953
mreB_5
Rod shape-determining protein MreB.
 
 
 0.941
ftsQ
Cell division protein FtsQ; Essential cell division protein.
 
 
 0.930
ftsW_3
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.878
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.857
KPU42246.1
Rod shape-determining protein MreD.
  
  
 0.857
pbpA
Penicillin-binding protein A.
  
  
0.851
pbpF_1
Penicillin-binding protein 1F.
 
 
 0.848
pbpF_2
Penicillin-binding protein 1F.
 
 
 0.846
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.