STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU42293.1O-antigen ligase. (403 aa)    
Predicted Functional Partners:
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.870
gspA
General stress protein A.
  
 
 0.568
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.546
KPU43716.1
Polysaccharide biosynthesis protein.
  
  
 0.507
hisE
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
 
  
 0.493
wcaJ_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.489
epsL
Putative sugar transferase EpsL.
  
  
 0.489
KPU43709.1
Acyltransferase family protein.
  
    0.474
KPU43717.1
Acyltransferase family protein.
  
    0.474
KPU42292.1
Hypothetical protein.
       0.430
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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