STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpF_2Penicillin-binding protein 1F. (760 aa)    
Predicted Functional Partners:
spoVD_1
Stage V sporulation protein D.
 
0.919
spoVD_2
Stage V sporulation protein D.
 
0.917
divIVA
Septum site-determining protein DivIVA.
   
 
 0.916
pbpA
Penicillin-binding protein A.
 
 
 0.874
spoVD_3
Stage V sporulation protein D.
 
 
 0.846
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
 
 
 0.767
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
   
 
 0.766
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.757
ftsW_4
Lipid II flippase FtsW; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
 
 
 0.717
mepM_4
Murein DD-endopeptidase MepM.
  
   
 0.707
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.