STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaK_3Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK. (154 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
    
   0.895
alkA_3
DNA-3-methyladenine glycosylase 2.
       0.756
ogt_3
methylated-DNA--protein-cysteine methyltransferase, constitutive; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.756
KPU42352.1
Hypothetical protein.
       0.559
ybaK_1
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.
  
     0.538
KPU42356.1
Hypothetical protein.
       0.515
cheR2
Chemotaxis protein methyltransferase cher2.
    
   0.424
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.424
rhaR
HTH-type transcriptional activator RhaR.
  
     0.412
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.