Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KPU42366.1 | KPU45244.1 | OXPF_41510 | OXPF_11360 | Hypothetical protein. | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.951 |
| KPU42366.1 | nifJ_2 | OXPF_41510 | OXPF_36080 | Hypothetical protein. | Pyruvate-flavodoxin oxidoreductase. | 0.734 |
| KPU42366.1 | phoA_1 | OXPF_41510 | OXPF_04700 | Hypothetical protein. | Alkaline phosphatase precursor; Belongs to the alkaline phosphatase family. | 0.794 |
| KPU42366.1 | phoA_2 | OXPF_41510 | OXPF_05560 | Hypothetical protein. | Alkaline phosphatase 4 precursor; Belongs to the alkaline phosphatase family. | 0.794 |
| KPU42366.1 | polA | OXPF_41510 | OXPF_40400 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.829 |
| KPU42366.1 | rho | OXPF_41510 | OXPF_16890 | Hypothetical protein. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.733 |
| KPU42366.1 | rplW | OXPF_41510 | OXPF_38060 | Hypothetical protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.855 |
| KPU42366.1 | rpmC | OXPF_41510 | OXPF_38000 | Hypothetical protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.851 |
| KPU42366.1 | secE | OXPF_41510 | OXPF_38220 | Hypothetical protein. | Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.950 |
| KPU42366.1 | secY | OXPF_41510 | OXPF_37880 | Hypothetical protein. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.954 |
| KPU45244.1 | KPU42366.1 | OXPF_11360 | OXPF_41510 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Hypothetical protein. | 0.951 |
| KPU45244.1 | polA | OXPF_11360 | OXPF_40400 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.426 |
| KPU45244.1 | rho | OXPF_11360 | OXPF_16890 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.731 |
| KPU45244.1 | rplW | OXPF_11360 | OXPF_38060 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.805 |
| KPU45244.1 | rpmC | OXPF_11360 | OXPF_38000 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.810 |
| KPU45244.1 | secE | OXPF_11360 | OXPF_38220 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.991 |
| KPU45244.1 | secY | OXPF_11360 | OXPF_37880 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.989 |
| nifJ_2 | KPU42366.1 | OXPF_36080 | OXPF_41510 | Pyruvate-flavodoxin oxidoreductase. | Hypothetical protein. | 0.734 |
| nifJ_2 | polA | OXPF_36080 | OXPF_40400 | Pyruvate-flavodoxin oxidoreductase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.449 |
| nifJ_2 | rho | OXPF_36080 | OXPF_16890 | Pyruvate-flavodoxin oxidoreductase. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.590 |
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