KPU42427.1 protein (Oxobacter pfennigii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPU42427.1

Iron only nitrogenase protein AnfO (AnfO_nitrog). (224 aa)

Predicted Functional Partners:

nifB_3

0.821

nifD_2

0.796

KPU42428.1

0.785

nifK_2

0.756

glnB_2

0.712

nifD_1

0.672

glnB_3

0.579

nifK_1

0.509

nifB_2

0.490

nifD_3

0.472

Your Current Organism:

Oxobacter pfennigii

NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPU42427.1	KPU42428.1	OXPF_42120	OXPF_42130	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Hypothetical protein.	0.785
KPU42427.1	glnB_2	OXPF_42120	OXPF_09230	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogen regulatory protein P-II.	0.712
KPU42427.1	glnB_3	OXPF_42120	OXPF_09240	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogen regulatory protein P-II 1; Belongs to the P(II) protein family.	0.579
KPU42427.1	nifB_2	OXPF_42120	OXPF_02950	Iron only nitrogenase protein AnfO (AnfO_nitrog).	FeMo cofactor biosynthesis protein NifB.	0.490
KPU42427.1	nifB_3	OXPF_42120	OXPF_09280	Iron only nitrogenase protein AnfO (AnfO_nitrog).	FeMo cofactor biosynthesis protein NifB; Belongs to the NifD/NifK/NifE/NifN family.	0.821
KPU42427.1	nifD_1	OXPF_42120	OXPF_09250	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogenase molybdenum-iron protein alpha chain.	0.672
KPU42427.1	nifD_2	OXPF_42120	OXPF_09270	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family.	0.796
KPU42427.1	nifD_3	OXPF_42120	OXPF_15770	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogenase molybdenum-iron protein alpha chain.	0.472
KPU42427.1	nifK_1	OXPF_42120	OXPF_02940	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogenase molybdenum-iron protein beta chain; Belongs to the NifD/NifK/NifE/NifN family.	0.509
KPU42427.1	nifK_2	OXPF_42120	OXPF_09260	Iron only nitrogenase protein AnfO (AnfO_nitrog).	Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.	0.756
KPU42428.1	KPU42427.1	OXPF_42130	OXPF_42120	Hypothetical protein.	Iron only nitrogenase protein AnfO (AnfO_nitrog).	0.785
glnB_2	KPU42427.1	OXPF_09230	OXPF_42120	Nitrogen regulatory protein P-II.	Iron only nitrogenase protein AnfO (AnfO_nitrog).	0.712
glnB_2	glnB_3	OXPF_09230	OXPF_09240	Nitrogen regulatory protein P-II.	Nitrogen regulatory protein P-II 1; Belongs to the P(II) protein family.	0.967
glnB_2	nifB_2	OXPF_09230	OXPF_02950	Nitrogen regulatory protein P-II.	FeMo cofactor biosynthesis protein NifB.	0.642
glnB_2	nifB_3	OXPF_09230	OXPF_09280	Nitrogen regulatory protein P-II.	FeMo cofactor biosynthesis protein NifB; Belongs to the NifD/NifK/NifE/NifN family.	0.911
glnB_2	nifD_1	OXPF_09230	OXPF_09250	Nitrogen regulatory protein P-II.	Nitrogenase molybdenum-iron protein alpha chain.	0.955
glnB_2	nifD_2	OXPF_09230	OXPF_09270	Nitrogen regulatory protein P-II.	Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family.	0.920
glnB_2	nifD_3	OXPF_09230	OXPF_15770	Nitrogen regulatory protein P-II.	Nitrogenase molybdenum-iron protein alpha chain.	0.477
glnB_2	nifK_1	OXPF_09230	OXPF_02940	Nitrogen regulatory protein P-II.	Nitrogenase molybdenum-iron protein beta chain; Belongs to the NifD/NifK/NifE/NifN family.	0.501
glnB_2	nifK_2	OXPF_09230	OXPF_09260	Nitrogen regulatory protein P-II.	Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.	0.958