STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_2Putative ABC transporter ATP-binding protein YxlF. (300 aa)    
Predicted Functional Partners:
KPU42503.1
ABC-2 family transporter protein.
 
 0.989
KPU42501.1
Hypothetical protein.
 
    0.952
sigM_4
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.921
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
  
 
0.890
KPU42930.1
Putative ABC transporter ATP-binding protein.
 
  
0.859
ytrE
ABC transporter ATP-binding protein YtrE.
 
  
0.853
KPU44373.1
ABC-2 family transporter protein.
  
 0.691
drrA_3
Doxorubicin resistance ATP-binding protein DrrA.
  
  
  0.669
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
   
 
0.645
KPU44595.1
ABC-2 type transporter.
  
 
 0.564
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.