STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sauU_3Putative sulfoacetate transporter SauU. (417 aa)    
Predicted Functional Partners:
kdgR
Transcriptional regulator KdgR.
 
  
 0.608
kipR
HTH-type transcriptional regulator KipR.
 
  
 0.589
KPU42552.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
     0.583
oxlT
Oxalate:formate antiporter.
  
 
 0.528
yhjX
Putative MFS-type transporter YhjX.
  
 
 0.515
metH_30
Methionine synthase.
       0.515
pknB
Serine/threonine-protein kinase PknB.
  
  
 0.509
pbuE
Purine efflux pump PbuE.
  
  
 0.440
KPU42551.1
Hypothetical protein.
       0.430
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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