STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ34_00110Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)    
Predicted Functional Partners:
HQ34_00105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.836
HQ34_00100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.517
EvgS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
HQ34_00080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.458
LptB_3
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.422
PorA_2
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.413
YdcR
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.412
Your Current Organism:
Porphyromonas cangingivalis
NCBI taxonomy Id: 36874
Other names: ATCC 700135, CCUG 47700, JCM 15983, NCTC 12856, P. cangingivalis, VPB 4874
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