Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HQ29_00935Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
HQ29_00940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
HQ29_02140
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.442
HQ29_02155
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.442
HQ29_04740
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.442
HQ29_07525
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.442
HQ29_08075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.442
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
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