STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ29_01985Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)    
Predicted Functional Partners:
HQ29_03205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.665
HQ29_03210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.665
HQ29_10140
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.665
HQ29_01980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
HQ29_03895
This fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.447
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.