STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ29_02485Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
HQ29_08990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.522
HQ29_03465
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.485
HQ29_04825
23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.477
HQ29_04520
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.474
HQ29_05810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.429
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.