Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
HQ29_08075Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
HQ29_04745
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.986
HQ29_08420
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.983
HQ29_02100
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.981
HQ29_07525
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.980
HQ29_01585
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.979
HQ29_02060
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.979
HQ29_02065
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.979
HQ29_02115
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.979
HQ29_02140
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.979
HQ29_02155
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.979
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
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