STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ29_08710Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
HQ29_01960
Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.803
HQ29_01975
N-acetylneuraminate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.790
HQ29_04800
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.788
HQ29_01970
N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.759
HQ29_01955
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
HQ29_03565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
HQ29_01965
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.717
HQ29_08715
tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
HQ29_08705
Lipoyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
HQ29_08700
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.